Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015882126.1_cds_XP_016438042.1_33746
CDS Infomation

[gene=LOC107764027] [db_xref=GeneID:107764027] [protein=rab11 family-interacting protein 4B-like isoform X2] [protein_id=XP_016438042.1] [location=complement(join(134360..134611,136385..136600,137026..137265,137368..137532,138915..139723,139872..139980,140340..140417))] [gbkey=CDS]
Sequence

ATGTTTCCAAGGAAGAATATTCCTCCTGCCCCACCCAAGGGTTTCTTGCGGATAAAAACT
AGAACCCTACTAGAAGAGAGACGATCTTCCTTGGAGGAGTGGATGACCAAATTACTCTCT
GATATTGATGTTTCAAGAAGTGCTCCAGTGGCATCTTTTCTCGAACTGGAAGCTGCTGCT
AGATCTTCTTTCCAAGATGAAAACCAACATGCTTCAGAATCAAATCCTTTTCTGAATAGT
TCTGTTTCTTCCCTTCAAGTTCATCCTAGTGCAAGCTTGTCTGCAATAACTGCGAGTTCA
TCGCTCACATCAGATTATGGTAGTGACACAGCTTATGAGATATCTGATGTTGGCACACCA
CGCCTTGGAAGGGATAATAACTCTGATTTTGGGACAGATGATCTCTCGTTGGATGAGGAT
GTGACAAGTCCAATAGATAAGTTTGTGAAGTATGGAATGTCCAACATTGACGAAGGCTTG
TTCATGGGTCAGGCTATTCTAGAACAACTTGGAAATTATCCTAGACATAGGGTGCACAGT
AGAGAGATTAATAAATTTGAAGAGAACAATAAAGCCAATGGAAATACTTCCAGATCGTCT
GATCTTGCTGTTAGTACTGATGGTATAAGCGGACTTTCTTCGGAGCTGGAGAACGCCAAA
GTTATCCATCATGCTAGAAAGTTATCAGCTGAGAGCATAGGAAGTGATACGAGTTCCCAA
AGAGGCAGTGAATTGTCAGGTTCAGCAATCCCGAATTCATACGGACAAGGACCGATCAAC
ATCCCCAGAGCGGCTGAGACGTCAGGAAACGTTGAGAACACTGACTTACTGCTGCCAAGT
GATGTGCAATTATTACTTCCTTCAGATCAACGCCAAAAAATGAATAGAGTACTTACAACC
ATGCAAAGGAGACTGACAACAGCAAAAACTGACATGGAGGATCTTATCTCAAGATTAAAT
CAGGAAATTGCTGTGAAAGACTACCTCACAACTAAGGTTAAGGATTTGGAAGTGGAGCTC
GAGGCTACTAAACAGAAAAGCAAAGAAAACCTTGAGCAAGCAATCTTGATTGAAAGGGAA
AGGGTCACCCAGATGCAGTGGGATATGGAAGAGCTTCGGCAGAAGTCATTTGAAATGGAA
CTGAAATTGAACTCACACAAGGTTAAACTGGGCAATGCTTCCATGGAAGACAATGCCAGT
CAGGAGAAAGACAGAATCTTGCTGGAGTTGGATGCTACAAAAGGGAAGCTTGATGAGTTG
CAGAAACAACATCAAGAACTTGAAGTAAAATCAAAAGCTGATGTTAAAGTTCTCGTTAAA
GAAATAAAATCTCTTCGAGGCTCACAAGCAGATTTGAAGCAGCAGCTAGATCATTCACTT
AAAGGAAAATTGGAGGCTGAGAGACTTTATGAACAAGAGAGGCAAGCTAATGAACAAGCA
AGGACATCTTGGCAGAAGCTGCTACATGAATGTCAAGTTCTTCAACAGCGCTTTGAAGAA
TGCAACATTAATTTAGTCAACGAAAAAGAAGACCTTATCATGGATTTTCCATCATGCTCA
GATGCCTTGAATCTCCTCACAGCATATGACAATCAAATCAACCTTATCCTTGCAGAGGTG
AACGCAGACAAAGGAACCGAATCCTCGGTTTCTACTGCTGAGACAATGGATGATGTGAAT
AATGACTCCTGGACAGTAGATGACAAGTTGAGAAATGTGCTGACAAATATCCTTGTCAAT
AATGGTAAATTGAGAAAACAGGTGAACTCTGTCATCCGTTATGCTCTGAAAGAGAAACTT
TCATCTCCTCCAAGAGAGTGTGAAGATTCTCCAATTGAAACTGTAGAAAGCAAGAACTTA
GATAGATGA

Peptide Sequence

PEP ID

XP_016438042.1
PEP Infomation

PREDICTED: rab11 family-interacting protein 4B-like isoform X2 [Nicotiana tabacum]
Sequence

MFPRKNIPPAPPKGFLRIKTRTLLEERRSSLEEWMTKLLSDIDVSRSAPVASFLELEAAA
RSSFQDENQHASESNPFLNSSVSSLQVHPSASLSAITASSSLTSDYGSDTAYEISDVGTP
RLGRDNNSDFGTDDLSLDEDVTSPIDKFVKYGMSNIDEGLFMGQAILEQLGNYPRHRVHS
REINKFEENNKANGNTSRSSDLAVSTDGISGLSSELENAKVIHHARKLSAESIGSDTSSQ
RGSELSGSAIPNSYGQGPINIPRAAETSGNVENTDLLLPSDVQLLLPSDQRQKMNRVLTT
MQRRLTTAKTDMEDLISRLNQEIAVKDYLTTKVKDLEVELEATKQKSKENLEQAILIERE
RVTQMQWDMEELRQKSFEMELKLNSHKVKLGNASMEDNASQEKDRILLELDATKGKLDEL
QKQHQELEVKSKADVKVLVKEIKSLRGSQADLKQQLDHSLKGKLEAERLYEQERQANEQA
RTSWQKLLHECQVLQQRFEECNINLVNEKEDLIMDFPSCSDALNLLTAYDNQINLILAEV
NADKGTESSVSTAETMDDVNNDSWTVDDKLRNVLTNILVNNGKLRKQVNSVIRYALKEKL
SSPPRECEDSPIETVESKNLDR

Transcript Sequence

Gene sequence data has not been registered.